Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1021577	0.89[ASN][1000 genomes]
rs12187015	0.85[ASN][1000 genomes]
rs12189161	0.82[ASN][1000 genomes]
rs12189350	0.85[ASN][1000 genomes]
rs12518600	0.91[ASN][1000 genomes]
rs12518601	0.91[ASN][1000 genomes]
rs12520028	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13170487	0.85[ASN][1000 genomes]
rs13173571	0.88[ASN][1000 genomes]
rs13183492	0.88[ASN][1000 genomes]
rs13189863	0.82[ASN][1000 genomes]
rs13190297	0.82[EUR][1000 genomes]
rs36955	0.80[ASN][1000 genomes]
rs41236	0.85[ASN][1000 genomes]
rs4705500	0.91[ASN][1000 genomes]
rs4705661	0.91[ASN][1000 genomes]
rs4705662	0.91[ASN][1000 genomes]
rs554843	0.82[ASN][1000 genomes]
rs607821	0.82[ASN][1000 genomes]
rs7704337	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024203	chr5:113596392-113659935	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113657200-113660000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:113657400-113660000	Weak transcription	HUVEC	blood vessel

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