Variant report

Variant	rs36955
Chromosome Location	chr5:113668945-113668946
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10068757	1.00[CHB][hapmap]
rs10519386	1.00[CHB][hapmap]
rs12187015	0.82[ASN][1000 genomes]
rs12189161	0.85[ASN][1000 genomes]
rs12189350	0.82[ASN][1000 genomes]
rs12517304	0.80[ASN][1000 genomes]
rs12518600	0.88[ASN][1000 genomes]
rs12518601	0.88[ASN][1000 genomes]
rs12520028	0.83[ASN][1000 genomes]
rs13173571	0.91[ASN][1000 genomes]
rs13183492	0.91[ASN][1000 genomes]
rs13189863	0.85[ASN][1000 genomes]
rs163207	1.00[CHB][hapmap]
rs163301	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs163302	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs163303	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs163304	0.83[AMR][1000 genomes]
rs163306	1.00[CHB][hapmap]
rs168110	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17136627	1.00[CHB][hapmap]
rs1813839	1.00[CHB][hapmap]
rs181949	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs337686	1.00[CHB][hapmap]
rs337688	1.00[CHB][hapmap]
rs337694	1.00[CHB][hapmap]
rs337701	1.00[CHB][hapmap]
rs337703	1.00[CHB][hapmap]
rs337706	1.00[CHB][hapmap]
rs337713	1.00[CHB][hapmap]
rs337715	1.00[CHB][hapmap]
rs337716	1.00[CHB][hapmap]
rs36938	0.81[AMR][1000 genomes]
rs36940	1.00[CHB][hapmap]
rs36942	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs36943	1.00[CHB][hapmap]
rs36944	1.00[CHB][hapmap]
rs36945	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36946	0.81[AMR][1000 genomes]
rs36949	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36950	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36957	0.82[AMR][1000 genomes]
rs36959	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs40179	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs402876	1.00[CHB][hapmap]
rs4705500	0.88[ASN][1000 genomes]
rs4705661	0.88[ASN][1000 genomes]
rs4705662	0.88[ASN][1000 genomes]
rs4705669	1.00[CHB][hapmap]
rs4705670	1.00[CHB][hapmap]
rs636200	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113668200-113669000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:113668800-113669000	Enhancers	HUVEC	blood vessel

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