Variant report

Variant	rs337706
Chromosome Location	chr5:113744455-113744456
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:113744294..113747144-chr5:113748947..113751115,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10068757	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10519386	1.00[CHB][hapmap]
rs11241277	1.00[ASN][1000 genomes]
rs163207	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs163209	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs163306	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17136627	1.00[CHB][hapmap]
rs173991	0.86[ASN][1000 genomes]
rs1813839	1.00[CHB][hapmap]
rs337686	1.00[CHB][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs337688	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs337694	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs337696	1.00[ASN][1000 genomes]
rs337697	1.00[ASN][1000 genomes]
rs337698	1.00[ASN][1000 genomes]
rs337701	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs337702	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337703	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337713	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337715	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337716	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs36937	0.86[ASN][1000 genomes]
rs36940	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs36941	0.86[ASN][1000 genomes]
rs36943	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs36944	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs36948	1.00[ASN][1000 genomes]
rs402876	1.00[ASN][1000 genomes]
rs4705501	0.86[ASN][1000 genomes]
rs4705669	1.00[CHB][hapmap]
rs4705670	1.00[CHB][hapmap]
rs481248	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113742400-113744800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:113742400-113744800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr5:113742600-113744800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:113742600-113753200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr5:113743400-113744800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr5:113743400-113744800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr5:113743400-113744800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr5:113743600-113744600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr5:113743600-113745000	Flanking Active TSS	Liver	Liver
10	chr5:113743800-113744600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr5:113743800-113751600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:113744000-113745600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr5:113744200-113744800	Enhancers	HUES64 Cell Line	embryonic stem cell

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