Variant report
| Variant | rs173991 |
|---|---|
| Chromosome Location | chr5:113681742-113681743 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10068757 | 0.81[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11241277 | 0.86[ASN][1000 genomes] |
| rs163207 | 0.86[ASN][1000 genomes] |
| rs163209 | 0.86[ASN][1000 genomes] |
| rs163306 | 0.81[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs337686 | 0.86[ASN][1000 genomes] |
| rs337688 | 0.86[ASN][1000 genomes] |
| rs337694 | 0.86[ASN][1000 genomes] |
| rs337696 | 0.86[ASN][1000 genomes] |
| rs337697 | 0.86[ASN][1000 genomes] |
| rs337698 | 0.86[ASN][1000 genomes] |
| rs337701 | 0.86[ASN][1000 genomes] |
| rs337702 | 0.86[ASN][1000 genomes] |
| rs337703 | 0.86[ASN][1000 genomes] |
| rs337706 | 0.86[ASN][1000 genomes] |
| rs337713 | 0.86[ASN][1000 genomes] |
| rs337715 | 0.86[ASN][1000 genomes] |
| rs337716 | 0.86[ASN][1000 genomes] |
| rs36937 | 0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36940 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36941 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36943 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36944 | 1.00[ASN][1000 genomes] |
| rs36948 | 0.81[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs402876 | 0.86[ASN][1000 genomes] |
| rs4705501 | 0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs481248 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882728 | chr5:113651694-113731423 | Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:113681600-113682000 | Enhancers | Fetal Muscle Leg | muscle |
