Variant report

Variant	rs337698
Chromosome Location	chr5:113712754-113712755
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10068757	1.00[ASN][1000 genomes]
rs11241277	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs163207	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs163209	1.00[ASN][1000 genomes]
rs163306	1.00[ASN][1000 genomes]
rs173991	0.86[ASN][1000 genomes]
rs3112766	1.00[EUR][1000 genomes]
rs337686	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337688	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337694	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337696	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337701	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337702	1.00[ASN][1000 genomes]
rs337703	1.00[ASN][1000 genomes]
rs337706	1.00[ASN][1000 genomes]
rs337713	1.00[ASN][1000 genomes]
rs337715	1.00[ASN][1000 genomes]
rs337716	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36937	0.86[ASN][1000 genomes]
rs36940	0.86[ASN][1000 genomes]
rs36941	0.86[ASN][1000 genomes]
rs36943	0.86[ASN][1000 genomes]
rs36944	0.86[ASN][1000 genomes]
rs36948	1.00[ASN][1000 genomes]
rs402876	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705501	0.86[ASN][1000 genomes]
rs481248	0.86[ASN][1000 genomes]
rs72799679	0.87[EUR][1000 genomes]
rs72799684	0.87[EUR][1000 genomes]
rs72799692	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113699800-113714800	Weak transcription	Left Ventricle	heart
2	chr5:113700600-113714200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:113702800-113716000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr5:113704000-113714200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:113705400-113714200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:113707400-113713000	Weak transcription	Brain Anterior Caudate	brain
7	chr5:113710200-113713000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr5:113710200-113713000	Enhancers	Liver	Liver
9	chr5:113710400-113714000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:113711800-113712800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:113711800-113713000	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr5:113712000-113714400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:113712200-113713800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr5:113712400-113714200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:113712600-113713800	Enhancers	Pancreas	Pancrea
16	chr5:113712600-113714400	Weak transcription	H1 Cell Line	embryonic stem cell

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