Variant report

Variant	rs72799692
Chromosome Location	chr5:113717432-113717433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11241277	0.91[EUR][1000 genomes]
rs163207	0.96[EUR][1000 genomes]
rs3112766	0.83[EUR][1000 genomes]
rs337686	0.96[EUR][1000 genomes]
rs337688	0.96[EUR][1000 genomes]
rs337694	0.96[EUR][1000 genomes]
rs337697	0.83[EUR][1000 genomes]
rs337698	0.83[EUR][1000 genomes]
rs337701	0.91[EUR][1000 genomes]
rs337716	0.91[EUR][1000 genomes]
rs402876	0.96[EUR][1000 genomes]
rs72799679	0.82[EUR][1000 genomes]
rs72799684	0.82[EUR][1000 genomes]
rs72799700	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72801834	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113713200-113730800	Weak transcription	Brain Anterior Caudate	brain
2	chr5:113714600-113718200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:113714800-113720800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:113715000-113722400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:113715000-113722600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:113715000-113722800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:113715000-113723800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:113715000-113727800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:113716200-113718000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:113716200-113718000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:113716600-113722000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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