Variant report

Variant	rs402876
Chromosome Location	chr5:113716075-113716076
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10068757	1.00[ASN][1000 genomes]
rs11241277	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs163207	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs163209	1.00[ASN][1000 genomes]
rs163306	1.00[ASN][1000 genomes]
rs173991	0.86[ASN][1000 genomes]
rs3112766	0.87[EUR][1000 genomes]
rs337686	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337688	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337694	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337696	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337697	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337698	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337701	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337702	1.00[ASN][1000 genomes]
rs337703	1.00[ASN][1000 genomes]
rs337706	1.00[ASN][1000 genomes]
rs337713	1.00[ASN][1000 genomes]
rs337715	1.00[ASN][1000 genomes]
rs337716	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36937	0.86[ASN][1000 genomes]
rs36940	0.86[ASN][1000 genomes]
rs36941	0.86[ASN][1000 genomes]
rs36943	0.86[ASN][1000 genomes]
rs36944	0.86[ASN][1000 genomes]
rs36948	1.00[ASN][1000 genomes]
rs36950	0.84[YRI][hapmap]
rs4705501	0.86[ASN][1000 genomes]
rs481248	0.86[ASN][1000 genomes]
rs72799692	0.96[EUR][1000 genomes]
rs72799700	0.91[EUR][1000 genomes]
rs72801834	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3429063	chr5:113714478-113716651	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3420716	chr5:113714803-113716251	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113713200-113730800	Weak transcription	Brain Anterior Caudate	brain
2	chr5:113714600-113716200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:113714600-113718200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:113714800-113720800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:113715000-113716200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:113715000-113722400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:113715000-113722600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr5:113715000-113722800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:113715000-113723800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr5:113715000-113727800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr5:113715800-113716200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr5:113716000-113716200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:113716000-113716600	Genic enhancers	HUES48 Cell Line	embryonic stem cell

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