Variant report

Variant	rs3112766
Chromosome Location	chr5:113713377-113713378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11241277	0.83[EUR][1000 genomes]
rs163207	0.87[EUR][1000 genomes]
rs337686	0.87[EUR][1000 genomes]
rs337688	0.87[EUR][1000 genomes]
rs337694	0.87[EUR][1000 genomes]
rs337696	0.94[EUR][1000 genomes]
rs337697	1.00[EUR][1000 genomes]
rs337698	1.00[EUR][1000 genomes]
rs337701	0.83[EUR][1000 genomes]
rs337716	0.83[EUR][1000 genomes]
rs402876	0.87[EUR][1000 genomes]
rs72799679	0.87[EUR][1000 genomes]
rs72799684	0.87[EUR][1000 genomes]
rs72799692	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113699800-113714800	Weak transcription	Left Ventricle	heart
2	chr5:113700600-113714200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:113702800-113716000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr5:113704000-113714200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:113705400-113714200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:113710400-113714000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:113712000-113714400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:113712200-113713800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:113712400-113714200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:113712600-113713800	Enhancers	Pancreas	Pancrea
11	chr5:113712600-113714400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:113712800-113713600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:113713000-113713600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr5:113713000-113714400	Flanking Active TSS	Liver	Liver
15	chr5:113713000-113714600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr5:113713000-113715000	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr5:113713200-113713400	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr5:113713200-113713600	Enhancers	Gastric	stomach
19	chr5:113713200-113730800	Weak transcription	Brain Anterior Caudate	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links