Variant report

Variant	rs163306
Chromosome Location	chr5:113710609-113710610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10068757	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519386	1.00[CHB][hapmap]
rs11241277	1.00[ASN][1000 genomes]
rs163207	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs163209	1.00[ASN][1000 genomes]
rs17136627	1.00[CHB][hapmap]
rs173991	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1813839	1.00[CHB][hapmap]
rs337686	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs337688	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs337694	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs337696	1.00[ASN][1000 genomes]
rs337697	1.00[ASN][1000 genomes]
rs337698	1.00[ASN][1000 genomes]
rs337701	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs337702	1.00[ASN][1000 genomes]
rs337703	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs337706	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs337713	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs337715	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs337716	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs36937	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs36940	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36941	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36943	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36944	0.84[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36948	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs402876	1.00[ASN][1000 genomes]
rs4705501	0.86[ASN][1000 genomes]
rs4705669	1.00[CHB][hapmap]
rs4705670	1.00[CHB][hapmap]
rs481248	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113699800-113712600	Weak transcription	Pancreas	Pancrea
2	chr5:113699800-113714800	Weak transcription	Left Ventricle	heart
3	chr5:113700600-113714200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:113702800-113716000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr5:113704000-113714200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:113704400-113711800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:113705400-113714200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr5:113705600-113711800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr5:113707400-113711800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:113707400-113713000	Weak transcription	Brain Anterior Caudate	brain
11	chr5:113710200-113713000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:113710200-113713000	Enhancers	Liver	Liver
13	chr5:113710400-113714000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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