Variant report

Variant	rs36940
Chromosome Location	chr5:113694408-113694409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr5:113693984-113694415	H1-hESC	embryonic stem cell:	n/a	n/a
2	RAD21	chr5:113693994-113694423	IMR90	lung:	n/a	n/a
3	CTCF	chr5:113694260-113694410	HVMF	connective:	n/a	n/a
4	CTCF	chr5:113694020-113694421	IMR90	lung:	n/a	chr5:113694228-113694244
5	CTCF	chr5:113694073-113694412	GM12878	blood:	n/a	chr5:113694228-113694244
6	CTCF	chr5:113694019-113694509	HCT-116	colon:	n/a	chr5:113694228-113694244
7	CTCF	chr5:113694020-113694421	MCF-7	breast:	n/a	chr5:113694228-113694244
8	SMC3	chr5:113694089-113694413	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
KCNN2	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10068757	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10519386	1.00[CHB][hapmap]
rs11241277	0.86[ASN][1000 genomes]
rs163207	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs163209	0.86[ASN][1000 genomes]
rs163306	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17136627	1.00[CHB][hapmap]
rs173991	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1813839	1.00[CHB][hapmap]
rs337686	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs337688	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs337694	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs337696	0.86[ASN][1000 genomes]
rs337697	0.86[ASN][1000 genomes]
rs337698	0.86[ASN][1000 genomes]
rs337701	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs337702	0.86[ASN][1000 genomes]
rs337703	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs337706	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs337713	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs337715	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs337716	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs36937	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36941	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36944	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36948	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs402876	0.86[ASN][1000 genomes]
rs4705501	1.00[ASN][1000 genomes]
rs4705669	1.00[CHB][hapmap]
rs4705670	1.00[CHB][hapmap]
rs481248	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113692000-113695200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:113692000-113695600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:113692000-113695800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:113692600-113694600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:113694000-113695000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:113694200-113695000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:113694200-113695000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:113694200-113695000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:113694400-113694800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:113694400-113695000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr5:113694400-113695200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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