Variant report

Variant	rs337703
Chromosome Location	chr5:113735420-113735421
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10068757	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs10519386	1.00[CHB][hapmap]
rs11241277	1.00[ASN][1000 genomes]
rs163207	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs163209	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs163306	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs17136627	1.00[CHB][hapmap]
rs173991	0.86[ASN][1000 genomes]
rs1813839	1.00[CHB][hapmap]
rs337686	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs337688	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs337694	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs337696	1.00[ASN][1000 genomes]
rs337697	1.00[ASN][1000 genomes]
rs337698	1.00[ASN][1000 genomes]
rs337701	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs337702	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337706	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337713	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337716	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs36937	0.86[ASN][1000 genomes]
rs36940	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs36941	0.86[ASN][1000 genomes]
rs36943	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs36944	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs36948	1.00[ASN][1000 genomes]
rs402876	1.00[ASN][1000 genomes]
rs4705501	0.86[ASN][1000 genomes]
rs4705669	1.00[CHB][hapmap]
rs4705670	1.00[CHB][hapmap]
rs481248	0.86[ASN][1000 genomes]
rs715730	0.86[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113731800-113739800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:113731800-113743400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:113732000-113742600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:113733000-113740200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:113734800-113736400	Enhancers	Liver	Liver

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