Variant report

Variant	rs715730
Chromosome Location	chr5:113726539-113726540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28729910	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs337703	0.86[GIH][hapmap]
rs337715	0.86[GIH][hapmap]
rs73782212	0.91[EUR][1000 genomes]
rs73782234	1.00[EUR][1000 genomes]
rs73782238	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113713200-113730800	Weak transcription	Brain Anterior Caudate	brain
2	chr5:113715000-113727800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:113723800-113727400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:113723800-113728000	Weak transcription	Brain Hippocampus Middle	brain
5	chr5:113725000-113727800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:113725000-113728200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:113725200-113726800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:113725200-113727400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:113725200-113730200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr5:113725200-113730800	Enhancers	Liver	Liver
11	chr5:113725800-113727000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr5:113725800-113727600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr5:113726200-113727200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr5:113726400-113726800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr5:113726400-113727000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr5:113726400-113728200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr5:113726400-113728800	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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