Variant report

Variant	rs73782234
Chromosome Location	chr5:113753371-113753372
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs28729910	0.87[EUR][1000 genomes]
rs56247741	1.00[ASN][1000 genomes]
rs57406559	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57975370	1.00[ASN][1000 genomes]
rs58502173	0.86[ASN][1000 genomes]
rs61115935	0.86[ASN][1000 genomes]
rs715730	1.00[EUR][1000 genomes]
rs73782212	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73782229	0.86[ASN][1000 genomes]
rs73782233	0.86[ASN][1000 genomes]
rs73782236	1.00[ASN][1000 genomes]
rs73782238	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs922126	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113744800-113754200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr5:113749600-113756000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:113752000-113754000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:113752200-113754000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:113752200-113754800	Enhancers	Liver	Liver
6	chr5:113752400-113753600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:113753000-113754200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:113753200-113753800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:113753200-113753800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr5:113753200-113754000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:113753200-113754600	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links