Variant report

Variant	rs57406559
Chromosome Location	chr5:113756282-113756283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10050368	1.00[AMR][1000 genomes]
rs10060646	1.00[AMR][1000 genomes]
rs1457764	1.00[AMR][1000 genomes]
rs1840983	1.00[AMR][1000 genomes]
rs55697384	1.00[AMR][1000 genomes]
rs55914631	1.00[AMR][1000 genomes]
rs55941350	1.00[AMR][1000 genomes]
rs56088944	1.00[AMR][1000 genomes]
rs56247741	1.00[ASN][1000 genomes]
rs57975370	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58003154	1.00[AMR][1000 genomes]
rs58263371	1.00[AMR][1000 genomes]
rs58502173	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61115935	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61223690	1.00[AMR][1000 genomes]
rs6885839	1.00[AMR][1000 genomes]
rs73782205	1.00[AMR][1000 genomes]
rs73782217	1.00[AMR][1000 genomes]
rs73782220	1.00[AMR][1000 genomes]
rs73782221	1.00[AMR][1000 genomes]
rs73782222	1.00[AMR][1000 genomes]
rs73782224	1.00[AMR][1000 genomes]
rs73782225	1.00[AMR][1000 genomes]
rs73782229	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73782233	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73782234	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73782236	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782238	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs922126	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113754000-113757200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:113754600-113756800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:113755400-113756600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:113755600-113756600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:113755800-113756400	Enhancers	Fetal Heart	heart
6	chr5:113755800-113756600	Enhancers	Liver	Liver
7	chr5:113756000-113756600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:113756000-113756600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr5:113756000-113758000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:113756200-113759400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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