Variant report

Variant	rs10060646
Chromosome Location	chr5:113690078-113690079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10050368	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1457764	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1840983	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55697384	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55914631	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55941350	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56088944	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57406559	1.00[AMR][1000 genomes]
rs57975370	1.00[AMR][1000 genomes]
rs58003154	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58263371	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58502173	1.00[AMR][1000 genomes]
rs60410279	1.00[ASN][1000 genomes]
rs61115935	1.00[AMR][1000 genomes]
rs61223690	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6885839	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782205	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782212	0.93[ASN][1000 genomes]
rs73782217	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782220	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782221	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782222	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782224	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782225	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782226	0.85[ASN][1000 genomes]
rs73782229	1.00[AMR][1000 genomes]
rs73782233	1.00[AMR][1000 genomes]
rs73782236	1.00[AMR][1000 genomes]
rs922126	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113683400-113690600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:113687800-113690400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:113690000-113692600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:113690000-113692800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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