Variant report

Variant	rs1457764
Chromosome Location	chr5:113683914-113683915
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10050368	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10060646	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1840983	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55697384	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55914631	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55941350	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56088944	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57406559	1.00[AMR][1000 genomes]
rs57975370	1.00[AMR][1000 genomes]
rs58003154	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58263371	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58502173	1.00[AMR][1000 genomes]
rs60410279	1.00[ASN][1000 genomes]
rs61115935	1.00[AMR][1000 genomes]
rs61223690	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6885839	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782212	0.93[ASN][1000 genomes]
rs73782217	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782220	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782221	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782222	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782224	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782225	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782226	0.85[ASN][1000 genomes]
rs73782229	1.00[AMR][1000 genomes]
rs73782233	1.00[AMR][1000 genomes]
rs73782236	1.00[AMR][1000 genomes]
rs922126	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113683400-113690600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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