Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10050368	1.00[AMR][1000 genomes]
rs10060646	1.00[AMR][1000 genomes]
rs1457764	1.00[AMR][1000 genomes]
rs1840983	1.00[AMR][1000 genomes]
rs55697384	1.00[AMR][1000 genomes]
rs55914631	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55941350	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56088944	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56247741	0.86[ASN][1000 genomes]
rs57406559	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs57975370	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs58003154	1.00[AMR][1000 genomes]
rs58263371	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61115935	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61223690	1.00[AMR][1000 genomes]
rs6885839	1.00[AMR][1000 genomes]
rs73782205	1.00[AMR][1000 genomes]
rs73782217	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782220	1.00[AMR][1000 genomes]
rs73782221	1.00[AMR][1000 genomes]
rs73782222	1.00[AMR][1000 genomes]
rs73782224	1.00[AMR][1000 genomes]
rs73782225	1.00[AMR][1000 genomes]
rs73782226	0.93[ASN][1000 genomes]
rs73782229	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782233	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782234	0.86[ASN][1000 genomes]
rs73782236	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73782238	0.86[ASN][1000 genomes]
rs922126	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113731800-113743400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:113732000-113742600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:113736000-113742800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:113739800-113742400	Weak transcription	Liver	Liver
5	chr5:113740400-113742400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:113740800-113743200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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