Variant report

Variant	rs73782222
Chromosome Location	chr5:113724837-113724838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10050368	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10060646	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1457764	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1840983	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55697384	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55914631	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55941350	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56088944	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57406559	1.00[AMR][1000 genomes]
rs57975370	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58003154	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58263371	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58502173	1.00[AMR][1000 genomes]
rs60410279	1.00[ASN][1000 genomes]
rs61115935	1.00[AMR][1000 genomes]
rs61223690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6885839	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782205	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782212	0.93[ASN][1000 genomes]
rs73782217	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782220	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782221	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782224	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782225	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73782226	0.85[ASN][1000 genomes]
rs73782229	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782233	1.00[AMR][1000 genomes]
rs73782236	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs922126	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113713200-113730800	Weak transcription	Brain Anterior Caudate	brain
2	chr5:113715000-113727800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:113721800-113725000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:113722000-113725400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr5:113722200-113725200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:113722400-113725000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:113722600-113725200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:113722800-113725000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:113722800-113725600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr5:113723000-113725000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:113723600-113725400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr5:113723800-113727400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr5:113723800-113728000	Weak transcription	Brain Hippocampus Middle	brain
14	chr5:113724400-113726400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr5:113724600-113725000	Enhancers	H9 Cell Line	embryonic stem cell
16	chr5:113724600-113725000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr5:113724600-113725000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr5:113724600-113725200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr5:113724600-113725200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:113724600-113725200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr5:113724800-113725200	Flanking Active TSS	Liver	Liver

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