Variant report

Variant	rs73782212
Chromosome Location	chr5:113703628-113703629
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10050368	0.86[ASN][1000 genomes]
rs10060646	0.93[ASN][1000 genomes]
rs1457764	0.93[ASN][1000 genomes]
rs1840983	0.93[ASN][1000 genomes]
rs55697384	0.93[ASN][1000 genomes]
rs55914631	0.93[ASN][1000 genomes]
rs55941350	0.93[ASN][1000 genomes]
rs56088944	0.93[ASN][1000 genomes]
rs58003154	0.93[ASN][1000 genomes]
rs58263371	0.93[ASN][1000 genomes]
rs60410279	0.93[ASN][1000 genomes]
rs61223690	0.93[ASN][1000 genomes]
rs6885839	0.93[ASN][1000 genomes]
rs715730	0.91[EUR][1000 genomes]
rs73782205	0.93[ASN][1000 genomes]
rs73782217	0.93[ASN][1000 genomes]
rs73782220	0.93[ASN][1000 genomes]
rs73782221	0.93[ASN][1000 genomes]
rs73782222	0.93[ASN][1000 genomes]
rs73782224	0.93[ASN][1000 genomes]
rs73782225	0.93[ASN][1000 genomes]
rs73782234	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73782238	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113699800-113712600	Weak transcription	Pancreas	Pancrea
2	chr5:113699800-113714800	Weak transcription	Left Ventricle	heart
3	chr5:113700000-113706400	Weak transcription	Brain Hippocampus Middle	brain
4	chr5:113700200-113709800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr5:113700600-113714200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:113701200-113707400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:113701400-113710200	Weak transcription	Liver	Liver
8	chr5:113701600-113705600	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr5:113701800-113705600	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:113702000-113704000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:113702000-113706400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:113702200-113708000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr5:113702400-113704400	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr5:113702400-113705400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr5:113702800-113716000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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