Variant report

Variant	rs337711
Chromosome Location	chr5:113748571-113748572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1013168	0.88[JPT][hapmap]
rs1072922	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12188044	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12519857	0.86[ASN][1000 genomes]
rs12520509	0.86[ASN][1000 genomes]
rs12523150	0.84[ASN][1000 genomes]
rs13155731	0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13156919	0.83[ASN][1000 genomes]
rs13157173	0.83[ASN][1000 genomes]
rs13163662	0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs13173796	0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13174521	0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs13176052	1.00[JPT][hapmap]
rs13179135	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13181189	0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs13183393	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13184658	1.00[JPT][hapmap]
rs13186627	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs13187753	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs13190428	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1457760	1.00[JPT][hapmap]
rs1457761	0.92[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1457762	1.00[JPT][hapmap]
rs1496390	0.86[JPT][hapmap]
rs163210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs163211	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs163304	0.83[ASN][1000 genomes]
rs168090	0.96[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs181949	0.83[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs2125146	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs337683	0.96[CEU][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs337684	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs337685	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs337689	0.88[JPT][hapmap]
rs337691	0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs337695	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs337699	0.88[JPT][hapmap]
rs337704	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs337705	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs337707	0.85[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs337708	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs337709	0.85[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs337710	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs337712	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs337714	0.80[CEU][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs338622	0.86[EUR][1000 genomes]
rs338623	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs338625	0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs338663	0.87[EUR][1000 genomes]
rs338666	0.86[EUR][1000 genomes]
rs36942	0.83[CHB][hapmap]
rs36945	0.83[CHB][hapmap]
rs36949	0.83[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs36950	0.83[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3857431	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs388084	0.88[JPT][hapmap]
rs4705504	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4705665	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4705667	0.88[JPT][hapmap]
rs4705668	0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6859284	0.96[CEU][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs716845	0.89[ASN][1000 genomes]
rs921981	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113742600-113753200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr5:113743800-113751600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:113744800-113750800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:113744800-113753200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:113744800-113754200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:113746400-113751600	Enhancers	Liver	Liver
7	chr5:113747200-113748600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:113747200-113749800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:113747400-113749600	Enhancers	HMEC	breast
10	chr5:113747400-113751600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr5:113747600-113748600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:113747600-113749400	Enhancers	NHEK	skin
13	chr5:113747800-113749800	Enhancers	NHDF-Ad	bronchial
14	chr5:113748000-113749000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:113748200-113749200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:113748200-113749600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:113748400-113748800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr5:113748400-113748800	Enhancers	Colon Smooth Muscle	Colon
19	chr5:113748400-113749000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr5:113748400-113749600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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