Variant report

Variant	rs11958855
Chromosome Location	chr5:113641145-113641146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11241274	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11743003	0.97[ASN][1000 genomes]
rs13178721	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13186627	0.88[CHB][hapmap]
rs13187753	0.89[CHB][hapmap]
rs13190573	0.88[ASN][1000 genomes]
rs1993516	0.98[ASN][1000 genomes]
rs41236	0.85[ASN][1000 genomes]
rs4705660	0.90[ASN][1000 genomes]
rs554843	0.88[ASN][1000 genomes]
rs607821	0.88[ASN][1000 genomes]
rs7734407	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024203	chr5:113596392-113659935	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021335	chr5:113599444-113659146	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv537866	chr5:113599444-113659146	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113637400-113643800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:113638800-113641200	Weak transcription	Fetal Heart	heart
3	chr5:113640800-113641400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:113640800-113642000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:113641000-113641400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr5:113641000-113641400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:113641000-113641400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:113641000-113642000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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