Variant report

Variant	rs2417776
Chromosome Location	chr9:110017167-110017168
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110015966..110018595-chr9:110020108..110022273,3	MCF-7	breast:
2	chr9:110014211..110018622-chr9:110040932..110043716,4	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10113916	0.87[ASN][1000 genomes]
rs10119641	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10122970	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10481632	0.89[ASN][1000 genomes]
rs10739236	0.89[ASN][1000 genomes]
rs10816477	1.00[ASN][1000 genomes]
rs10816480	0.99[ASN][1000 genomes]
rs10816485	0.89[ASN][1000 genomes]
rs10816490	0.87[ASN][1000 genomes]
rs10816491	0.87[ASN][1000 genomes]
rs10978769	0.80[EUR][1000 genomes]
rs10978775	1.00[ASN][1000 genomes]
rs10978776	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10978777	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10978791	0.87[ASN][1000 genomes]
rs12342066	1.00[ASN][1000 genomes]
rs12345455	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12555417	1.00[ASN][1000 genomes]
rs1805329	0.87[ASN][1000 genomes]
rs2005143	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2417784	0.87[ASN][1000 genomes]
rs28534368	0.89[ASN][1000 genomes]
rs28769087	0.98[ASN][1000 genomes]
rs28848858	1.00[ASN][1000 genomes]
rs61701375	0.92[ASN][1000 genomes]
rs698475	0.87[ASN][1000 genomes]
rs7036284	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7040217	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7041137	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7867544	0.81[ASN][1000 genomes]
rs7873745	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs817836	0.87[ASN][1000 genomes]
rs817838	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs817839	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs817840	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs817841	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs817843	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs817844	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs817845	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs817847	0.81[ASN][1000 genomes]
rs942291	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9632893	0.81[ASN][1000 genomes]
rs9969728	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893698	chr9:109998563-110052660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv508560	chr9:110006490-110060539	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110007000-110022600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:110012400-110022600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:110014800-110017600	Weak transcription	Pancreas	Pancrea
4	chr9:110014800-110021400	Weak transcription	Adipose Nuclei	Adipose
5	chr9:110014800-110022800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:110015400-110017200	Active TSS	HSMMtube	muscle
7	chr9:110015400-110022600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:110016000-110017200	Weak transcription	NHDF-Ad	bronchial
9	chr9:110016400-110017600	Weak transcription	HepG2	liver
10	chr9:110017000-110017200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:110017000-110018400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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