Variant report

Variant	rs7873745
Chromosome Location	chr9:110031410-110031411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110030231..110032782-chr9:110035060..110038842,3	MCF-7	breast:
2	chr9:110030757..110033354-chr9:110044206..110047003,3	MCF-7	breast:
3	chr9:110031224..110033017-chr9:110046490..110048325,2	K562	blood:
4	chr9:110007873..110010290-chr9:110031092..110033178,2	K562	blood:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10113916	0.86[ASN][1000 genomes]
rs10119641	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10122970	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10481632	0.88[ASN][1000 genomes]
rs10739234	0.80[EUR][1000 genomes]
rs10739236	0.88[ASN][1000 genomes]
rs10816477	0.99[ASN][1000 genomes]
rs10816480	0.98[ASN][1000 genomes]
rs10816485	0.88[ASN][1000 genomes]
rs10816490	0.86[ASN][1000 genomes]
rs10816491	0.86[ASN][1000 genomes]
rs10978775	0.99[ASN][1000 genomes]
rs10978776	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10978777	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10978791	0.86[ASN][1000 genomes]
rs12342066	0.99[ASN][1000 genomes]
rs12345455	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12555417	0.99[ASN][1000 genomes]
rs1805329	0.86[ASN][1000 genomes]
rs2005143	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2417776	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2417784	0.86[ASN][1000 genomes]
rs28534368	0.88[ASN][1000 genomes]
rs28769087	0.97[ASN][1000 genomes]
rs28848858	0.99[ASN][1000 genomes]
rs61701375	0.90[ASN][1000 genomes]
rs67197321	0.91[AFR][1000 genomes]
rs698475	0.86[ASN][1000 genomes]
rs7035611	0.80[EUR][1000 genomes]
rs7036284	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7040217	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7041137	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7867544	0.80[ASN][1000 genomes]
rs817836	0.86[ASN][1000 genomes]
rs817838	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs817839	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs817840	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs817841	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs817843	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs817844	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs817845	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs817847	0.80[ASN][1000 genomes]
rs942291	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9632893	0.80[ASN][1000 genomes]
rs9969728	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893698	chr9:109998563-110052660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv508560	chr9:110006490-110060539	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110023800-110031600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:110023800-110031600	Weak transcription	Placenta	Placenta
3	chr9:110023800-110031600	Weak transcription	HSMMtube	muscle
4	chr9:110024000-110031600	Weak transcription	NHDF-Ad	bronchial
5	chr9:110028000-110031800	Weak transcription	Fetal Lung	lung
6	chr9:110028200-110032800	Weak transcription	Pancreas	Pancrea
7	chr9:110028800-110031600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:110029000-110031600	Weak transcription	HSMM	muscle
9	chr9:110029400-110032800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:110029400-110035800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:110029800-110032200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:110030000-110031600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:110030000-110031600	Weak transcription	HMEC	breast
14	chr9:110031000-110031800	Enhancers	HepG2	liver
15	chr9:110031200-110031600	Enhancers	Liver	Liver
16	chr9:110031400-110031800	Enhancers	A549	lung
17	chr9:110031400-110032200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:110031400-110033400	Enhancers	Adipose Nuclei	Adipose

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