Variant report

Variant	rs2423406
Chromosome Location	chr20:9653425-9653426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1018561	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1885563	0.96[EUR][1000 genomes]
rs2181217	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2206476	0.82[EUR][1000 genomes]
rs2206479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2206480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2327204	0.96[EUR][1000 genomes]
rs2423403	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2423405	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2423407	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2423408	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2423409	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4816157	0.96[EUR][1000 genomes]
rs6056775	0.96[EUR][1000 genomes]
rs6056787	0.98[EUR][1000 genomes]
rs6108324	0.84[AFR][1000 genomes]
rs7345944	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458866	chr20:9597555-9983300	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv585411	chr20:9597555-9983300	Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428685	chr20:9644231-9800536	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:9649800-9653600	Weak transcription	Fetal Brain Female	brain
2	chr20:9653200-9654200	Weak transcription	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links