Variant report

Variant	rs2423409
Chromosome Location	chr20:9654935-9654936
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1018561	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1885563	0.96[EUR][1000 genomes]
rs2181217	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2206476	0.82[EUR][1000 genomes]
rs2206479	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2206480	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2327204	0.96[EUR][1000 genomes]
rs2423403	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2423405	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2423406	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2423407	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2423408	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4816157	0.96[EUR][1000 genomes]
rs6056775	0.96[EUR][1000 genomes]
rs6056787	0.98[EUR][1000 genomes]
rs7345944	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458866	chr20:9597555-9983300	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv585411	chr20:9597555-9983300	Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428685	chr20:9644231-9800536	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:9654000-9655600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr20:9654200-9655000	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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