Variant report

Variant	rs2423577
Chromosome Location	chr20:11535503-11535504
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2423567	0.81[CEU][hapmap];0.81[AMR][1000 genomes]
rs2423576	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851689	chr20:11515516-11758411	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11532800-11535600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr20:11532800-11536600	Weak transcription	Fetal Brain Male	brain
3	chr20:11535400-11535800	Enhancers	Fetal Stomach	stomach
4	chr20:11535400-11536000	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr20:11535400-11536600	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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