Variant report

Variant	rs2423576
Chromosome Location	chr20:11534488-11534489
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2207908	0.82[EUR][1000 genomes]
rs2224183	0.82[EUR][1000 genomes]
rs2423550	0.82[EUR][1000 genomes]
rs2423553	0.82[EUR][1000 genomes]
rs2423555	0.82[EUR][1000 genomes]
rs2423558	0.82[EUR][1000 genomes]
rs2423559	0.95[EUR][1000 genomes]
rs2423567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2423568	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2423569	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2423570	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2423577	0.81[AMR][1000 genomes]
rs57653747	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851689	chr20:11515516-11758411	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11530600-11535400	Weak transcription	Fetal Stomach	stomach
2	chr20:11532600-11535400	Weak transcription	Fetal Lung	lung
3	chr20:11532800-11535600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr20:11532800-11536600	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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