Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2207114	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2207130	0.93[EUR][1000 genomes]
rs2207908	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2423550	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2423551	0.90[EUR][1000 genomes]
rs2423553	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2423555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2423558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2423559	0.86[EUR][1000 genomes]
rs2423567	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2423568	0.82[EUR][1000 genomes]
rs2423569	0.82[EUR][1000 genomes]
rs2423570	0.82[EUR][1000 genomes]
rs2423576	0.82[EUR][1000 genomes]
rs57653747	0.85[EUR][1000 genomes]
rs6033152	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6040686	0.86[EUR][1000 genomes]
rs6040711	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6040712	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6078181	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs969293	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs973291	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522929	chr20:11411026-11516418	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11477400-11485600	Weak transcription	A549	lung
2	chr20:11478200-11483800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr20:11479400-11482400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr20:11479400-11482800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr20:11479600-11482400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr20:11479600-11482400	Enhancers	HMEC	breast
7	chr20:11479600-11482400	Enhancers	NHEK	skin
8	chr20:11480000-11482200	Weak transcription	Esophagus	oesophagus
9	chr20:11480800-11481600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr20:11481000-11481400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr20:11481200-11482400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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