Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2207114	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2207130	1.00[AFR][1000 genomes]
rs2207908	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2224183	0.86[EUR][1000 genomes]
rs2423550	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2423553	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2423555	0.86[EUR][1000 genomes]
rs2423558	0.86[EUR][1000 genomes]
rs2423567	0.95[EUR][1000 genomes]
rs2423568	0.95[EUR][1000 genomes]
rs2423569	0.95[EUR][1000 genomes]
rs2423570	0.95[EUR][1000 genomes]
rs2423576	0.95[EUR][1000 genomes]
rs57653747	0.99[EUR][1000 genomes]
rs6033152	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6040711	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6040712	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6078181	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs969293	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs973291	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522929	chr20:11411026-11516418	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11490800-11510400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:11497800-11504800	Weak transcription	Fetal Intestine Large	intestine
3	chr20:11498000-11502600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr20:11498000-11502600	Weak transcription	Fetal Intestine Small	intestine
5	chr20:11499200-11504000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr20:11500800-11502800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr20:11501000-11502600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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