Variant report
Variant | rs2423969 |
---|---|
Chromosome Location | chr20:15651436-15651437 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1362512 | 1.00[CEU][hapmap];0.85[TSI][hapmap] |
rs1420440 | 0.87[JPT][hapmap] |
rs2023386 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs2423968 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
rs2423970 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
rs377187 | 0.85[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes] |
rs448644 | 0.87[ASN][1000 genomes] |
rs455659 | 0.95[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap];0.84[MEX][hapmap];0.87[ASN][1000 genomes] |
rs459448 | 0.84[ASN][1000 genomes] |
rs459928 | 0.95[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes] |
rs459989 | 0.87[JPT][hapmap] |
rs460654 | 0.87[JPT][hapmap] |
rs462849 | 0.80[CHB][hapmap];0.86[JPT][hapmap] |
rs463020 | 0.91[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes] |
rs464304 | 0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes] |
rs464735 | 0.89[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes] |
rs466243 | 0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes] |
rs6135477 | 0.91[CHB][hapmap];0.91[JPT][hapmap] |
rs6135478 | 1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes] |
rs6135480 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | esv2751909 | chr20:15489871-15656007 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv833928 | chr20:15619962-15780758 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |