Variant report

Variant	rs464304
Chromosome Location	chr20:15636722-15636723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13044731	0.85[ASN][1000 genomes]
rs1420440	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2023386	0.91[CHB][hapmap];0.92[JPT][hapmap]
rs2423968	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs2423969	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs2423970	0.91[CHB][hapmap];0.92[JPT][hapmap]
rs377187	0.86[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs448644	0.95[ASN][1000 genomes]
rs455659	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs459448	0.92[ASN][1000 genomes]
rs459928	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs459989	0.96[JPT][hapmap];0.86[ASN][1000 genomes]
rs460066	0.89[ASN][1000 genomes]
rs460654	0.96[JPT][hapmap];0.88[ASN][1000 genomes]
rs462849	0.81[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs463020	0.91[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs464735	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs466243	0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs6135477	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs6135478	0.91[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs6135480	0.91[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15634000-15641200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:15634200-15637200	Enhancers	Fetal Heart	heart
3	chr20:15634800-15637400	Enhancers	Osteobl	bone
4	chr20:15635400-15639000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr20:15635600-15637400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr20:15635600-15639000	Weak transcription	Brain Hippocampus Middle	brain
7	chr20:15636000-15637400	Enhancers	Rectal Smooth Muscle	rectum
8	chr20:15636200-15637200	Enhancers	Fetal Stomach	stomach
9	chr20:15636200-15637400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr20:15636200-15637400	Enhancers	Fetal Kidney	kidney
11	chr20:15636400-15636800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr20:15636400-15636800	Flanking Active TSS	Colon Smooth Muscle	Colon
13	chr20:15636400-15636800	Enhancers	Fetal Muscle Leg	muscle
14	chr20:15636400-15637200	Enhancers	Placenta Amnion	Placenta Amnion
15	chr20:15636400-15637200	Enhancers	NHDF-Ad	bronchial
16	chr20:15636400-15637400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr20:15636600-15637000	Enhancers	HUVEC	blood vessel
18	chr20:15636600-15637200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr20:15636600-15637200	Enhancers	Brain Substantia Nigra	brain
20	chr20:15636600-15637400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr20:15636600-15637400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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