Variant report

Variant	rs2424525
Chromosome Location	chr20:23240969-23240970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1541236	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1541237	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2405225	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2405226	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2405227	0.82[EUR][1000 genomes]
rs6036354	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6036359	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6048661	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6048671	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6048674	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6106631	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912817	chr20:23127661-23240969	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1066734	chr20:23170094-23277628	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv458948	chr20:23234699-23292849	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv585721	chr20:23234699-23292849	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23214200-23241000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23238800-23250200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr20:23238800-23250400	Weak transcription	Aorta	Aorta
4	chr20:23239800-23244200	Weak transcription	Adipose Nuclei	Adipose
5	chr20:23240800-23241200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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