Variant report

Variant	rs2424529
Chromosome Location	chr20:23369317-23369318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23357022..23358701-chr20:23368809..23370316,2	MCF-7	breast:
2	chr20:23368690..23370704-chr20:23380288..23382155,2	MCF-7	breast:
3	chr20:23368468..23371240-chr20:23381189..23383577,2	K562	blood:
4	chr20:23366791..23369771-chr8:103359875..103362469,2	MCF-7	breast:
5	chr20:23368241..23370501-chr20:23374374..23376749,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1003417	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2281430	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2405231	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2424533	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2424538	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2424543	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2424547	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2424553	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs6048777	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6048797	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6076065	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6083105	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6083106	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs743021	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs999072	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2424529	NAPB	cis	Artery Tibial	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23344000-23392600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:23348000-23374200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr20:23348200-23384800	Weak transcription	Stomach Mucosa	stomach
4	chr20:23351200-23371000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr20:23351200-23374000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr20:23351400-23374000	Weak transcription	Fetal Brain Male	brain
7	chr20:23352800-23376400	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr20:23353000-23378200	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr20:23353400-23372400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr20:23353400-23374200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr20:23354400-23389000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr20:23354400-23399800	Weak transcription	Hela-S3	cervix
13	chr20:23354600-23374200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr20:23354600-23375200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr20:23354800-23371000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr20:23354800-23373600	Weak transcription	Colonic Mucosa	Colon
17	chr20:23356600-23374200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr20:23357000-23371200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr20:23357800-23370000	Weak transcription	Brain Substantia Nigra	brain
20	chr20:23358000-23371200	Weak transcription	Esophagus	oesophagus
21	chr20:23358000-23371200	Weak transcription	NHEK	skin
22	chr20:23358000-23373600	Weak transcription	Right Ventricle	heart
23	chr20:23358000-23374400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr20:23358200-23370600	Weak transcription	Pancreas	Pancrea
25	chr20:23358200-23373600	Weak transcription	Brain Angular Gyrus	brain
26	chr20:23358200-23377800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr20:23358400-23370600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr20:23358600-23372400	Weak transcription	HMEC	breast
29	chr20:23358800-23370200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr20:23359000-23371200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr20:23360200-23373600	Weak transcription	NHLF	lung
32	chr20:23360400-23371000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr20:23360800-23370600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr20:23361200-23370200	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr20:23361200-23399600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr20:23361600-23370200	Weak transcription	HSMMtube	muscle
37	chr20:23361800-23370000	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr20:23361800-23370200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr20:23362000-23369800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr20:23362000-23372400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr20:23362000-23372600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr20:23362800-23370200	Weak transcription	Stomach Smooth Muscle	stomach
43	chr20:23362800-23370600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr20:23363000-23370000	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr20:23363000-23370200	Weak transcription	Thymus	Thymus
46	chr20:23363000-23371000	Weak transcription	Aorta	Aorta
47	chr20:23363000-23371200	Weak transcription	Spleen	Spleen
48	chr20:23363000-23372400	Weak transcription	Colon Smooth Muscle	Colon
49	chr20:23363000-23374400	Weak transcription	Psoas Muscle	Psoas
50	chr20:23363000-23375000	Weak transcription	Fetal Heart	heart

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