Variant report

Variant	rs6083105
Chromosome Location	chr20:23368475-23368476
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23352221..23353875-chr20:23367348..23369170,2	K562	blood:
2	chr20:23368468..23371240-chr20:23381189..23383577,2	K562	blood:
3	chr20:23366791..23369771-chr8:103359875..103362469,2	MCF-7	breast:
4	chr20:23368241..23370501-chr20:23374374..23376749,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1003417	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1419008	0.91[ASN][1000 genomes]
rs2275787	0.81[AFR][1000 genomes]
rs2281430	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2405231	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2424528	0.81[AFR][1000 genomes]
rs2424529	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2424533	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2424538	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2424543	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2424547	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2424553	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4815199	0.81[AFR][1000 genomes]
rs6048777	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6048797	0.86[EUR][1000 genomes]
rs6076065	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6083087	0.81[AFR][1000 genomes]
rs6083095	0.81[AFR][1000 genomes]
rs6083099	0.81[AFR][1000 genomes]
rs6083100	0.81[AFR][1000 genomes]
rs6083104	0.85[AFR][1000 genomes]
rs6083106	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7269627	0.81[AFR][1000 genomes]
rs743021	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs743024	0.80[AFR][1000 genomes]
rs999072	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6083105	NAPB	cis	Artery Tibial	GTEx
rs6083105	NAPB	cis	Esophagus Muscularis	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23344000-23392600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:23348000-23374200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr20:23348200-23384800	Weak transcription	Stomach Mucosa	stomach
4	chr20:23351200-23371000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr20:23351200-23374000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr20:23351400-23374000	Weak transcription	Fetal Brain Male	brain
7	chr20:23352800-23376400	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr20:23353000-23378200	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr20:23353400-23372400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr20:23353400-23374200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr20:23354400-23389000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr20:23354400-23399800	Weak transcription	Hela-S3	cervix
13	chr20:23354600-23374200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr20:23354600-23375200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr20:23354800-23371000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr20:23354800-23373600	Weak transcription	Colonic Mucosa	Colon
17	chr20:23356600-23374200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr20:23356800-23368800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr20:23357000-23371200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr20:23357800-23370000	Weak transcription	Brain Substantia Nigra	brain
21	chr20:23358000-23371200	Weak transcription	Esophagus	oesophagus
22	chr20:23358000-23371200	Weak transcription	NHEK	skin
23	chr20:23358000-23373600	Weak transcription	Right Ventricle	heart
24	chr20:23358000-23374400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr20:23358200-23368600	Weak transcription	Fetal Kidney	kidney
26	chr20:23358200-23370600	Weak transcription	Pancreas	Pancrea
27	chr20:23358200-23373600	Weak transcription	Brain Angular Gyrus	brain
28	chr20:23358200-23377800	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr20:23358400-23370600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr20:23358600-23372400	Weak transcription	HMEC	breast
31	chr20:23358800-23370200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr20:23359000-23371200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr20:23360200-23373600	Weak transcription	NHLF	lung
34	chr20:23360400-23371000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr20:23360800-23370600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr20:23361000-23368600	Weak transcription	NHDF-Ad	bronchial
37	chr20:23361200-23370200	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr20:23361200-23399600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr20:23361600-23370200	Weak transcription	HSMMtube	muscle
40	chr20:23361800-23370000	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr20:23361800-23370200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr20:23362000-23368600	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr20:23362000-23369800	Weak transcription	Brain Cingulate Gyrus	brain
44	chr20:23362000-23372400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr20:23362000-23372600	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr20:23362800-23370200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr20:23362800-23370600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr20:23363000-23368600	Weak transcription	Fetal Thymus	thymus
49	chr20:23363000-23370000	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr20:23363000-23370200	Weak transcription	Thymus	Thymus

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