Variant report

Variant	rs2424644
Chromosome Location	chr20:24719970-24719971
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2424676	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1061281	chr20:24711635-24815107	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv544217	chr20:24711635-24815107	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv912825	chr20:24715544-24813345	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24716200-24723800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr20:24717400-24727600	Enhancers	Fetal Thymus	thymus
3	chr20:24718200-24723400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr20:24718400-24723800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr20:24719000-24720000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr20:24719000-24720800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr20:24719000-24721400	Enhancers	Fetal Kidney	kidney
8	chr20:24719400-24720600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr20:24719600-24720000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr20:24719600-24720000	Flanking Active TSS	Thymus	Thymus
11	chr20:24719600-24720600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr20:24719600-24720600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr20:24719600-24720800	Enhancers	Fetal Stomach	stomach
14	chr20:24719800-24720000	Enhancers	Spleen	Spleen
15	chr20:24719800-24720200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr20:24719800-24720400	Enhancers	Colon Smooth Muscle	Colon
17	chr20:24719800-24720400	Active TSS	Stomach Smooth Muscle	stomach
18	chr20:24719800-24720400	Flanking Active TSS	GM12878-XiMat	blood
19	chr20:24719800-24720600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr20:24719800-24720600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr20:24719800-24720600	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr20:24719800-24720800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr20:24719800-24720800	Flanking Active TSS	Dnd41	blood

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