Variant report

Variant	rs2425492
Chromosome Location	chr20:41031594-41031595
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2049971	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2142795	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2179217	0.87[AFR][1000 genomes]
rs2425494	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2425498	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6016785	0.83[ASN][1000 genomes]
rs6016791	0.83[ASN][1000 genomes]
rs6030212	0.84[ASN][1000 genomes]
rs6030229	0.88[ASN][1000 genomes]
rs6030236	0.88[ASN][1000 genomes]
rs6030238	0.87[ASN][1000 genomes]
rs6030239	0.85[ASN][1000 genomes]
rs932320	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41022400-41039400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:41030200-41031600	Enhancers	Fetal Muscle Leg	muscle
3	chr20:41030800-41031600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr20:41030800-41031600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr20:41031000-41031600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr20:41031000-41031800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr20:41031200-41031600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr20:41031200-41031600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr20:41031200-41031600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr20:41031200-41031600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr20:41031200-41031600	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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