Variant report

Variant	rs6016785
Chromosome Location	chr20:41050185-41050186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1125550	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1883269	0.92[CEU][hapmap];0.81[AMR][1000 genomes]
rs2142795	0.84[CEU][hapmap];0.88[CHB][hapmap];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2179217	0.92[CEU][hapmap];0.93[CHB][hapmap];0.85[AMR][1000 genomes]
rs2179218	0.83[CEU][hapmap]
rs2205945	0.83[CEU][hapmap];0.93[CHB][hapmap];0.88[AMR][1000 genomes]
rs2425490	0.80[CEU][hapmap]
rs2425491	0.92[CEU][hapmap]
rs2425492	0.83[ASN][1000 genomes]
rs2425494	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2425496	0.88[AMR][1000 genomes]
rs2425497	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs2425498	0.83[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3903491	0.92[CEU][hapmap]
rs4810356	0.92[CEU][hapmap];0.87[CHB][hapmap];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4812596	0.92[CEU][hapmap]
rs4812598	1.00[CEU][hapmap];0.93[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4812600	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6016791	0.82[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs6016792	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6030212	0.94[ASN][1000 genomes]
rs6030215	0.90[CEU][hapmap];0.92[CHB][hapmap];0.81[AMR][1000 genomes]
rs6030216	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6030217	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6030218	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs6030224	0.84[CEU][hapmap];0.93[CHB][hapmap];0.80[JPT][hapmap];0.88[AMR][1000 genomes]
rs6030229	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6030232	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6030233	0.88[AMR][1000 genomes]
rs6030236	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6030238	0.92[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6030239	0.92[CEU][hapmap];0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6072745	0.88[AMR][1000 genomes]
rs6102826	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6513791	0.92[CEU][hapmap];0.93[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7268459	0.84[CEU][hapmap];0.93[CHB][hapmap];0.80[JPT][hapmap];0.88[AMR][1000 genomes]
rs8123429	0.92[CEU][hapmap];0.93[CHB][hapmap];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs932320	0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs978457	0.81[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41042000-41070000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links