Variant report

Variant	rs2205945
Chromosome Location	chr20:41056284-41056285
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1125550	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1883269	0.91[ASW][hapmap];0.85[CEU][hapmap];0.91[MEX][hapmap];0.94[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2142795	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2179217	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2425490	0.82[CEU][hapmap]
rs2425491	0.85[CEU][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs2425494	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2425496	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2425497	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs2425498	0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4810355	0.86[EUR][1000 genomes]
rs4810356	0.93[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4812598	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4812599	0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs4812600	0.95[ASN][1000 genomes]
rs6016785	0.83[CEU][hapmap];0.93[CHB][hapmap];0.88[AMR][1000 genomes]
rs6016792	0.90[ASN][1000 genomes]
rs6030215	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6030216	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6030217	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6030218	0.87[CHB][hapmap];0.92[CHD][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs6030224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6030226	0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs6030229	0.93[CEU][hapmap];0.93[CHB][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap];0.90[AMR][1000 genomes]
rs6030232	1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs6030233	0.93[CEU][hapmap];0.90[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6030236	0.82[AMR][1000 genomes]
rs6030238	0.93[CEU][hapmap];0.87[CHB][hapmap]
rs6030239	0.93[CEU][hapmap];0.85[GIH][hapmap];0.81[AMR][1000 genomes]
rs6072745	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6102826	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6513791	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7268459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8123429	0.93[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap];0.84[MEX][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8125556	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs932320	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs978456	0.91[ASN][1000 genomes]
rs978457	0.87[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41042000-41070000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links