Variant report
| Variant | rs978456 |
|---|---|
| Chromosome Location | chr20:41052626-41052627 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1125550 | 0.90[ASN][1000 genomes] |
| rs2179217 | 0.88[ASN][1000 genomes] |
| rs2205945 | 0.91[ASN][1000 genomes] |
| rs4810356 | 0.91[ASN][1000 genomes] |
| rs4812598 | 0.94[ASN][1000 genomes] |
| rs4812599 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4812600 | 0.92[ASN][1000 genomes] |
| rs6016791 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6016792 | 0.88[ASN][1000 genomes] |
| rs6030212 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6030215 | 0.91[ASN][1000 genomes] |
| rs6030216 | 0.94[ASN][1000 genomes] |
| rs6030217 | 0.94[ASN][1000 genomes] |
| rs6030218 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6030224 | 0.92[ASN][1000 genomes] |
| rs6030226 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6030232 | 0.83[ASN][1000 genomes] |
| rs6030233 | 0.87[ASN][1000 genomes] |
| rs6102826 | 0.94[ASN][1000 genomes] |
| rs6513791 | 0.92[ASN][1000 genomes] |
| rs7268459 | 0.87[ASN][1000 genomes] |
| rs8123429 | 0.88[ASN][1000 genomes] |
| rs978457 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2751913 | chr20:40422982-41269321 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv532516 | chr20:40451059-41097155 | Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv833987 | chr20:41007663-41184914 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers | Chromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:41042000-41070000 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
