Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1125550	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2179217	0.81[ASN][1000 genomes]
rs2205945	0.90[ASN][1000 genomes]
rs4810356	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4812598	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4812599	0.83[ASN][1000 genomes]
rs4812600	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6016785	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6030215	0.90[ASN][1000 genomes]
rs6030216	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6030217	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6030218	0.90[ASN][1000 genomes]
rs6030224	0.86[ASN][1000 genomes]
rs6030226	0.83[ASN][1000 genomes]
rs6030229	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6030232	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6030233	0.87[ASN][1000 genomes]
rs6030236	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6030238	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6030239	0.85[EUR][1000 genomes]
rs6072745	0.84[ASN][1000 genomes]
rs6102826	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6513791	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7268459	0.87[ASN][1000 genomes]
rs8123429	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8125556	0.83[ASN][1000 genomes]
rs978456	0.88[ASN][1000 genomes]
rs978457	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41042000-41070000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:41059200-41061000	Weak transcription	Fetal Muscle Leg	muscle
3	chr20:41059400-41061600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr20:41059600-41061000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr20:41060000-41061200	Weak transcription	Adipose Nuclei	Adipose
6	chr20:41060800-41061200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr20:41060800-41062400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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