Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1125550	0.86[AMR][1000 genomes]
rs1883269	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2142795	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2179217	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2205945	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2425490	0.84[EUR][1000 genomes]
rs2425491	0.92[EUR][1000 genomes]
rs2425494	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2425498	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3091793	0.80[EUR][1000 genomes]
rs4810355	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4810356	0.86[AMR][1000 genomes]
rs4812596	0.81[EUR][1000 genomes]
rs4812598	0.88[AMR][1000 genomes]
rs6016785	0.88[AMR][1000 genomes]
rs6030215	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6030216	0.86[AMR][1000 genomes]
rs6030217	0.82[AMR][1000 genomes]
rs6030224	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6030229	0.86[AMR][1000 genomes]
rs6030233	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6072745	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6102826	0.82[AMR][1000 genomes]
rs7268459	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8123429	0.86[AMR][1000 genomes]
rs8125556	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs932320	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
4	esv3378637	chr20:41037338-41040536	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41022400-41039400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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