Variant report

Variant	rs2433027
Chromosome Location	chr10:95753641-95753642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HMGN3	chr10:95753421-95753762	K562	blood:	n/a	n/a
2	TEAD4	chr10:95753055-95754696	ECC-1	luminal epithelium:	n/a	n/a
3	POLR2A	chr10:95753413-95754006	A549	lung:	n/a	n/a
4	ZBTB7A	chr10:95753023-95754349	ECC-1	luminal epithelium:	n/a	chr10:95754256-95754263 chr10:95753464-95753473
5	ZBTB7A	chr10:95753170-95754250	ECC-1	luminal epithelium:	n/a	chr10:95753464-95753473
6	POLR2A	chr10:95752982-95754200	PANC-1	pancreas:	n/a	n/a
7	MAX	chr10:95753084-95754447	ECC-1	luminal epithelium:	n/a	n/a
8	CTCF	chr10:95753539-95753671	Fibrobl	skin:	n/a	n/a
9	MAX	chr10:95753135-95754400	A549	lung:	n/a	n/a
10	HA-E2F1	chr10:95753317-95753943	Hela-S3	cervix:	n/a	chr10:95753516-95753525 chr10:95753342-95753354
11	CTCF	chr10:95753600-95753750	HCPEpiC	choroid plexus:	n/a	n/a
12	POLR2A	chr10:95753641-95753731	ProgFib	skin:	n/a	n/a
13	POLR2A	chr10:95753285-95754127	A549	lung:	n/a	n/a
14	TEAD4	chr10:95753222-95754388	ECC-1	luminal epithelium:	n/a	n/a
15	POLR2A	chr10:95753543-95753930	U87	brain:	n/a	n/a
16	UBTF	chr10:95753365-95753786	K562	blood:	n/a	n/a
17	STAT3	chr10:95753549-95753696	MCF10A-Er-Src	breast:	n/a	chr10:95753627-95753635 chr10:95753612-95753635 chr10:95753625-95753636
18	POLR2A	chr10:95753524-95753822	HCT-116	colon:	n/a	n/a
19	RAD21	chr10:95753481-95753685	K562	blood:	n/a	n/a
20	REST	chr10:95753505-95754082	ECC-1	luminal epithelium:	n/a	n/a
21	E2F1	chr10:95753328-95753874	Hela-S3	cervix:	n/a	chr10:95753516-95753525 chr10:95753342-95753354
22	TAF1	chr10:95753215-95754385	ECC-1	luminal epithelium:	n/a	n/a
23	TCF12	chr10:95753154-95754357	ECC-1	luminal epithelium:	n/a	n/a
24	MAX	chr10:95751360-95754515	A549	lung:	n/a	chr10:95751988-95751997 chr10:95751987-95751996
25	MXI1	chr10:95753289-95754199	IMR90	lung:	n/a	n/a
26	POLR2A	chr10:95753227-95754098	ECC-1	luminal epithelium:	n/a	n/a
27	TCF12	chr10:95753299-95754629	A549	lung:	n/a	n/a
28	RAD21	chr10:95753540-95753784	IMR90	lung:	n/a	n/a
29	RAD21	chr10:95753507-95753718	SK-N-SH_RA	brain:	n/a	n/a
30	NRF1	chr10:95753197-95754256	SK-N-SH	brain:	n/a	chr10:95753516-95753525
31	YY1	chr10:95753476-95754084	ECC-1	luminal epithelium:	n/a	chr10:95753615-95753626
32	STAT3	chr10:95753557-95753743	MCF10A-Er-Src	breast:	n/a	chr10:95753627-95753635 chr10:95753612-95753635 chr10:95753625-95753636
33	POLR2A	chr10:95753409-95753884	HEK293	kidney:	n/a	n/a
34	EGR1	chr10:95753423-95753747	K562	blood:	n/a	n/a
35	MAZ	chr10:95753565-95753687	Hela-S3	cervix:	n/a	n/a
36	POLR2A	chr10:95753570-95754208	H1-neurons	neurons:	n/a	n/a
37	POLR2A	chr10:95753221-95754201	ECC-1	luminal epithelium:	n/a	n/a
38	MAZ	chr10:95753450-95753765	K562	blood:	n/a	n/a
39	CCNT2	chr10:95753494-95754147	K562	blood:	n/a	n/a
40	YY1	chr10:95753528-95754172	ECC-1	luminal epithelium:	n/a	chr10:95753615-95753626
41	POLR2A	chr10:95753492-95753832	HCT-116	colon:	n/a	n/a
42	CTCF	chr10:95753600-95753750	GM12865	blood:	n/a	n/a
43	YY1	chr10:95753461-95753705	K562	blood:	n/a	chr10:95753615-95753626
44	JUND	chr10:95753310-95754149	A549	lung:	n/a	n/a
45	CREB1	chr10:95753322-95753896	A549	lung:	n/a	n/a
46	ZNF263	chr10:95752275-95754426	HEK293-T-REx	kidney:	n/a	chr10:95752916-95752925 chr10:95752942-95752951
47	MAX	chr10:95753050-95754452	ECC-1	luminal epithelium:	n/a	n/a
48	POLR2A	chr10:95753394-95754071	Gliobla	brain:	n/a	n/a
49	UBTF	chr10:95753441-95753641	K562	blood:	n/a	n/a
50	CTCF	chr10:95753500-95753650	Caco-2	colon:	n/a	n/a

Variant related genes	Relation type
PLCE1	TF binding region

rs_ID	r²[population]
rs1223583	0.83[ASN][1000 genomes]
rs829232	0.83[ASN][1000 genomes]

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95751800-95753800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:95752400-95754600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
3	chr10:95752800-95754200	Active TSS	Stomach Smooth Muscle	stomach
4	chr10:95752800-95754600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr10:95753000-95754000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:95753000-95754400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:95753000-95754400	Active TSS	Fetal Brain Female	brain
8	chr10:95753000-95754600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr10:95753000-95754600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:95753000-95754600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
11	chr10:95753000-95754600	Active TSS	Right Ventricle	heart
12	chr10:95753000-95754600	Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr10:95753000-95756200	Active TSS	Rectal Smooth Muscle	rectum
14	chr10:95753200-95753800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:95753200-95753800	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:95753200-95753800	Bivalent/Poised TSS	NHEK	skin
17	chr10:95753200-95754000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
18	chr10:95753200-95754000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:95753200-95754000	Active TSS	Brain Germinal Matrix	brain
20	chr10:95753200-95754000	Active TSS	Esophagus	oesophagus
21	chr10:95753200-95754000	Bivalent/Poised TSS	HMEC	breast
22	chr10:95753200-95754000	Active TSS	HSMM	muscle
23	chr10:95753200-95754000	Active TSS	HSMMtube	muscle
24	chr10:95753200-95754000	Active TSS	Osteobl	bone
25	chr10:95753200-95754200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
26	chr10:95753200-95754200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr10:95753200-95754200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:95753200-95754200	Active TSS	Fetal Brain Male	brain
29	chr10:95753200-95754200	Active TSS	Fetal Heart	heart
30	chr10:95753200-95754200	Bivalent/Poised TSS	Fetal Thymus	thymus
31	chr10:95753200-95754200	Active TSS	Left Ventricle	heart
32	chr10:95753200-95754200	Active TSS	Hela-S3	cervix
33	chr10:95753200-95754200	Bivalent/Poised TSS	HUVEC	blood vessel
34	chr10:95753200-95754400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:95753200-95754400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
36	chr10:95753200-95754400	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:95753200-95754400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:95753200-95754400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:95753200-95754400	Bivalent/Poised TSS	Brain Angular Gyrus	brain
40	chr10:95753200-95754400	Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr10:95753200-95754400	Active TSS	Gastric	stomach
42	chr10:95753200-95754600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
43	chr10:95753200-95754600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
44	chr10:95753200-95754600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
45	chr10:95753200-95754600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr10:95753200-95754800	Active TSS	Duodenum Mucosa	Duodenum
47	chr10:95753200-95755000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
48	chr10:95753200-95755000	Active TSS	Colon Smooth Muscle	Colon
49	chr10:95753200-95755000	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
50	chr10:95753200-95755200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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