Variant report

Variant	rs1223583
Chromosome Location	chr10:95756500-95756501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95755786..95758462-chr10:95765831..95768542,2	MCF-7	breast:
2	chr10:95751776..95753515-chr10:95756414..95759286,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1096044	0.88[ASN][1000 genomes]
rs1223580	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap];0.93[ASN][1000 genomes]
rs1223584	0.81[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs1223585	0.81[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.82[TSI][hapmap];0.89[ASN][1000 genomes]
rs1223586	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1223587	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1223588	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1223590	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1223612	0.81[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs1223613	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap];0.93[ASN][1000 genomes]
rs1223614	0.80[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs1223615	0.88[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1223616	0.81[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1223617	0.81[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1223618	0.85[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap];0.91[ASN][1000 genomes]
rs1425300	0.85[ASN][1000 genomes]
rs1648001	0.81[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs1776842	0.85[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap];0.91[ASN][1000 genomes]
rs1776865	0.81[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs1935959	0.91[ASN][1000 genomes]
rs1954345	0.85[ASN][1000 genomes]
rs1954346	0.85[ASN][1000 genomes]
rs2433027	0.83[ASN][1000 genomes]
rs2911857	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2911858	0.87[ASN][1000 genomes]
rs4359134	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7068499	0.81[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs829226	0.89[ASN][1000 genomes]
rs829228	0.85[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.95[ASN][1000 genomes]
rs829229	0.81[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap];0.88[ASN][1000 genomes]
rs829232	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1223583	CYP2C9	cis	parietal	SCAN

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95753400-95756600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:95754200-95760600	Weak transcription	Spleen	Spleen
3	chr10:95754400-95759400	Weak transcription	Psoas Muscle	Psoas
4	chr10:95754600-95759000	Weak transcription	Ovary	ovary
5	chr10:95755000-95759400	Weak transcription	Placenta	Placenta
6	chr10:95755000-95762400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:95755200-95759000	Weak transcription	Adipose Nuclei	Adipose
8	chr10:95755200-95759000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:95755200-95759200	Weak transcription	Fetal Stomach	stomach
10	chr10:95755200-95759200	Weak transcription	Stomach Mucosa	stomach
11	chr10:95755400-95759600	Weak transcription	Fetal Intestine Large	intestine
12	chr10:95756000-95756600	Enhancers	Fetal Intestine Small	intestine
13	chr10:95756000-95756600	Genic enhancers	A549	lung
14	chr10:95756000-95758600	Weak transcription	Osteobl	bone
15	chr10:95756000-95758800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:95756000-95758800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:95756000-95758800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr10:95756000-95759000	Weak transcription	HSMM	muscle
19	chr10:95756000-95759600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:95756000-95762000	Weak transcription	Esophagus	oesophagus
21	chr10:95756200-95756600	Genic enhancers	Fetal Muscle Leg	muscle
22	chr10:95756200-95757400	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr10:95756200-95757600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr10:95756200-95757800	Weak transcription	HSMMtube	muscle
25	chr10:95756200-95758600	Weak transcription	Fetal Heart	heart
26	chr10:95756200-95758800	Weak transcription	NH-A	brain
27	chr10:95756200-95759000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr10:95756200-95759200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr10:95756200-95759200	Weak transcription	Lung	lung
30	chr10:95756200-95759200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr10:95756200-95766600	Weak transcription	Pancreas	Pancrea
32	chr10:95756400-95756600	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr10:95756400-95756800	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr10:95756400-95758000	Weak transcription	Right Atrium	heart
35	chr10:95756400-95758800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:95756400-95759000	Weak transcription	Colonic Mucosa	Colon
37	chr10:95756400-95759200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:95756400-95759400	Weak transcription	Gastric	stomach

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