Variant report

Variant	rs1096044
Chromosome Location	chr10:95770055-95770056
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1223580	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1223583	0.88[ASN][1000 genomes]
rs1223584	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1223585	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1223586	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1223587	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1223588	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1223590	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1223612	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1223613	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1223614	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1223615	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1223616	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1223617	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1223618	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1425300	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1648001	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1776842	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1776865	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1935959	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1954345	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1954346	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2911858	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4359134	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7068499	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs829226	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs829228	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs829229	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829232	0.88[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95761800-95771600	Weak transcription	Right Atrium	heart
2	chr10:95766800-95776600	Weak transcription	Small Intestine	intestine
3	chr10:95767000-95776800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:95767400-95776800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr10:95767600-95777400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:95767800-95774400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:95767800-95775200	Weak transcription	Psoas Muscle	Psoas
8	chr10:95767800-95776800	Weak transcription	HSMMtube	muscle
9	chr10:95767800-95789800	Weak transcription	Pancreas	Pancrea
10	chr10:95768000-95770800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:95768000-95771200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:95768200-95770800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:95768400-95770200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
14	chr10:95768400-95770200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:95768400-95770200	Strong transcription	Rectal Smooth Muscle	rectum
16	chr10:95768400-95770600	Strong transcription	Fetal Muscle Trunk	muscle
17	chr10:95768400-95771000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:95768400-95783000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:95768600-95770200	ZNF genes & repeats	Fetal Stomach	stomach
20	chr10:95768600-95770400	ZNF genes & repeats	Fetal Intestine Small	intestine
21	chr10:95768800-95773600	Weak transcription	Gastric	stomach
22	chr10:95769000-95770800	Weak transcription	Stomach Mucosa	stomach
23	chr10:95769200-95770200	ZNF genes & repeats	A549	lung
24	chr10:95769400-95770200	ZNF genes & repeats	Fetal Muscle Leg	muscle
25	chr10:95769400-95770200	Genic enhancers	Sigmoid Colon	Sigmoid Colon
26	chr10:95769600-95770200	ZNF genes & repeats	Fetal Intestine Large	intestine
27	chr10:95770000-95800800	Weak transcription	Colonic Mucosa	Colon

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