Variant report

Variant	rs1223617
Chromosome Location	chr10:95777150-95777151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1096044	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1223580	0.88[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1223583	0.81[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1223584	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1223585	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1223586	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1223587	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1223588	0.89[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1223590	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1223612	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1223613	0.88[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1223614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1223615	0.89[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1223616	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1223618	0.88[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1425300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1648001	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1776842	0.88[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1776865	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1935959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1954345	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1954346	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2911858	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4359134	0.89[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7068499	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829226	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs829228	0.88[CHB][hapmap];0.89[JPT][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs829229	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs829232	0.81[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95767600-95777400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:95767800-95789800	Weak transcription	Pancreas	Pancrea
3	chr10:95768400-95783000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:95770000-95800800	Weak transcription	Colonic Mucosa	Colon
5	chr10:95770200-95778000	Weak transcription	Fetal Intestine Large	intestine
6	chr10:95770200-95778000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:95770400-95783800	Weak transcription	Fetal Intestine Small	intestine
8	chr10:95772400-95783800	Weak transcription	Right Atrium	heart
9	chr10:95774800-95782600	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:95775400-95782800	Weak transcription	Stomach Mucosa	stomach
11	chr10:95776600-95777200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr10:95776600-95777200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr10:95776600-95777200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr10:95776600-95777200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr10:95776600-95777200	Flanking Active TSS	A549	lung
16	chr10:95776600-95777400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr10:95776600-95777600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr10:95776600-95778200	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr10:95776600-95778200	Enhancers	NH-A	brain
20	chr10:95776600-95778400	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr10:95776600-95778400	Enhancers	Osteobl	bone
22	chr10:95776800-95777200	Enhancers	Fetal Brain Male	brain
23	chr10:95776800-95777400	Enhancers	Fetal Stomach	stomach
24	chr10:95776800-95778000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:95776800-95778400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr10:95776800-95778400	Enhancers	HSMMtube	muscle
27	chr10:95776800-95778600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:95777000-95777200	Enhancers	Brain Anterior Caudate	brain
29	chr10:95777000-95777600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr10:95777000-95778000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:95777000-95778200	Enhancers	HSMM	muscle
32	chr10:95777000-95784400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links