Variant report

Variant	rs1223588
Chromosome Location	chr10:95760737-95760738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1096044	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1223580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1223583	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1223584	0.96[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1223585	0.89[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1223586	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1223587	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1223590	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1223612	0.89[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1223613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1223614	0.96[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1223615	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1223616	0.96[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1223617	0.89[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1223618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12766324	0.90[YRI][hapmap]
rs1425300	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1648001	0.96[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1776842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1776865	0.96[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1935959	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1954345	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1954346	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2911858	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4359134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7068499	0.96[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs829226	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs829228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs829229	0.96[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs829232	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95755000-95762400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:95756000-95762000	Weak transcription	Esophagus	oesophagus
3	chr10:95756200-95766600	Weak transcription	Pancreas	Pancrea
4	chr10:95757600-95761000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:95757600-95762600	Enhancers	Fetal Muscle Leg	muscle
6	chr10:95757800-95764200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:95758000-95761800	Enhancers	Right Atrium	heart
8	chr10:95758600-95760800	Enhancers	Fetal Heart	heart
9	chr10:95758800-95761000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:95759000-95761200	Enhancers	Adipose Nuclei	Adipose
11	chr10:95759000-95761200	Enhancers	Ovary	ovary
12	chr10:95759000-95766600	Enhancers	HSMM	muscle
13	chr10:95759200-95760800	Enhancers	Fetal Muscle Trunk	muscle
14	chr10:95759200-95762200	Enhancers	Stomach Mucosa	stomach
15	chr10:95759200-95763200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr10:95759400-95760800	Enhancers	Gastric	stomach
17	chr10:95759400-95762000	Enhancers	Psoas Muscle	Psoas
18	chr10:95759400-95762200	Enhancers	Fetal Intestine Small	intestine
19	chr10:95759400-95766800	Weak transcription	Fetal Kidney	kidney
20	chr10:95759600-95761000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:95759600-95761800	Enhancers	Fetal Intestine Large	intestine
22	chr10:95759600-95762000	Enhancers	Duodenum Mucosa	Duodenum
23	chr10:95759600-95762200	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr10:95759800-95761200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:95759800-95761800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:95759800-95762200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:95759800-95764200	Weak transcription	Colonic Mucosa	Colon
28	chr10:95759800-95764800	Weak transcription	Small Intestine	intestine
29	chr10:95759800-95765400	Weak transcription	Aorta	Aorta
30	chr10:95759800-95766200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr10:95760000-95760800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr10:95760000-95761200	Enhancers	Osteobl	bone
33	chr10:95760000-95764200	Enhancers	HSMMtube	muscle
34	chr10:95760200-95765200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr10:95760400-95760800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr10:95760400-95762600	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr10:95760400-95765200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:95760600-95760800	Enhancers	Fetal Lung	lung
39	chr10:95760600-95760800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
40	chr10:95760600-95760800	Enhancers	Spleen	Spleen
41	chr10:95760600-95760800	Flanking Active TSS	A549	lung
42	chr10:95760600-95761000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:95760600-95765000	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links