Variant report

Variant	rs1648001
Chromosome Location	chr10:95764860-95764861
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95763392..95765244-chr10:95925662..95928530,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1096044	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1223580	0.96[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1223583	0.81[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs1223584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1223585	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1223586	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1223587	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1223588	0.96[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1223590	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1223612	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1223613	0.96[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1223614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1223615	0.96[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1223616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1223617	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1223618	0.96[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1425300	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1776842	0.96[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1776865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1935959	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1954345	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1954346	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2911858	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4359134	0.96[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7068499	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs829226	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829228	0.96[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs829229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs829232	0.81[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95756200-95766600	Weak transcription	Pancreas	Pancrea
2	chr10:95759000-95766600	Enhancers	HSMM	muscle
3	chr10:95759400-95766800	Weak transcription	Fetal Kidney	kidney
4	chr10:95759800-95765400	Weak transcription	Aorta	Aorta
5	chr10:95759800-95766200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:95760200-95765200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:95760400-95765200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:95760600-95765000	Weak transcription	NH-A	brain
9	chr10:95760800-95765200	Weak transcription	Gastric	stomach
10	chr10:95760800-95766000	Weak transcription	Fetal Lung	lung
11	chr10:95760800-95766400	Weak transcription	Fetal Heart	heart
12	chr10:95760800-95768400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:95761000-95766000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:95761000-95766000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:95761200-95765200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:95761200-95766200	Weak transcription	Adipose Nuclei	Adipose
17	chr10:95761200-95766400	Weak transcription	Ovary	ovary
18	chr10:95761800-95771600	Weak transcription	Right Atrium	heart
19	chr10:95762000-95766400	Weak transcription	Psoas Muscle	Psoas
20	chr10:95762200-95765000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:95762600-95765800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr10:95762600-95766400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:95763200-95765400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:95764000-95765000	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr10:95764000-95766600	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr10:95764200-95765200	Weak transcription	HSMMtube	muscle
27	chr10:95764200-95765400	Enhancers	Fetal Muscle Leg	muscle
28	chr10:95764200-95766200	Enhancers	A549	lung
29	chr10:95764200-95768200	Enhancers	Fetal Intestine Small	intestine
30	chr10:95764200-95768400	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr10:95764400-95768400	Enhancers	Fetal Intestine Large	intestine
32	chr10:95764400-95768800	Enhancers	Duodenum Mucosa	Duodenum
33	chr10:95764600-95765000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:95764600-95765400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:95764800-95765200	Weak transcription	Colonic Mucosa	Colon
36	chr10:95764800-95766000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:95764800-95766000	Enhancers	Osteobl	bone
38	chr10:95764800-95766800	Enhancers	Small Intestine	intestine
39	chr10:95764800-95769000	Enhancers	Stomach Mucosa	stomach

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