Variant report

Variant	rs1223586
Chromosome Location	chr10:95766049-95766050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95764938..95767179-chr10:95785260..95787937,2	MCF-7	breast:
2	chr10:95755786..95758462-chr10:95765831..95768542,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1096044	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1223580	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1223583	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1223584	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1223585	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1223587	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1223588	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1223590	0.91[ASN][1000 genomes]
rs1223612	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1223613	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1223614	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1223615	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1223616	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1223617	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1223618	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1425300	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1648001	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1776842	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1776865	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1935959	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1954345	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1954346	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2911858	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4359134	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7068499	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs829226	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs829228	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs829229	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs829232	0.94[ASN][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95756200-95766600	Weak transcription	Pancreas	Pancrea
2	chr10:95759000-95766600	Enhancers	HSMM	muscle
3	chr10:95759400-95766800	Weak transcription	Fetal Kidney	kidney
4	chr10:95759800-95766200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:95760800-95766400	Weak transcription	Fetal Heart	heart
6	chr10:95760800-95768400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:95761200-95766200	Weak transcription	Adipose Nuclei	Adipose
8	chr10:95761200-95766400	Weak transcription	Ovary	ovary
9	chr10:95761800-95771600	Weak transcription	Right Atrium	heart
10	chr10:95762000-95766400	Weak transcription	Psoas Muscle	Psoas
11	chr10:95762600-95766400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:95764000-95766600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr10:95764200-95766200	Enhancers	A549	lung
14	chr10:95764200-95768200	Enhancers	Fetal Intestine Small	intestine
15	chr10:95764200-95768400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr10:95764400-95768400	Enhancers	Fetal Intestine Large	intestine
17	chr10:95764400-95768800	Enhancers	Duodenum Mucosa	Duodenum
18	chr10:95764800-95766800	Enhancers	Small Intestine	intestine
19	chr10:95764800-95769000	Enhancers	Stomach Mucosa	stomach
20	chr10:95765000-95766200	Enhancers	NH-A	brain
21	chr10:95765200-95766800	Enhancers	Colonic Mucosa	Colon
22	chr10:95765200-95767200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:95765200-95767800	Enhancers	HSMMtube	muscle
24	chr10:95765400-95766400	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr10:95765400-95766400	Weak transcription	Fetal Muscle Leg	muscle
26	chr10:95765400-95767200	Enhancers	Aorta	Aorta
27	chr10:95765600-95768400	Weak transcription	Gastric	stomach
28	chr10:95765800-95766200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:95765800-95766200	Genic enhancers	Rectal Mucosa Donor 29	rectum
30	chr10:95765800-95766600	Enhancers	Muscle Satellite Cultured Cells	--
31	chr10:95766000-95766200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:95766000-95766400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:95766000-95766400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr10:95766000-95766600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:95766000-95767000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr10:95766000-95767000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:95766000-95767000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:95766000-95767000	Enhancers	NHLF	lung
39	chr10:95766000-95767000	Flanking Active TSS	Osteobl	bone
40	chr10:95766000-95768000	Enhancers	Fetal Lung	lung
41	chr10:95766000-95768000	Enhancers	Skeletal Muscle Female	skeletal muscle

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