Variant report

Variant	rs2433277
Chromosome Location	chr1:93959725-93959726
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93955188..93957136-chr1:93959223..93960839,2	K562	blood:

rs_ID	r²[population]
rs1545839	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1991291	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2449373	1.00[AMR][1000 genomes]
rs2449376	1.00[AMR][1000 genomes]

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93943200-93974400	Weak transcription	Fetal Lung	lung
2	chr1:93944000-93974600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:93944200-93971800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:93944200-93974800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:93946800-93973200	Weak transcription	Fetal Intestine Small	intestine
6	chr1:93950400-93974800	Weak transcription	HepG2	liver
7	chr1:93951000-93972800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:93951600-93960000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:93952600-93973600	Weak transcription	Brain Germinal Matrix	brain
10	chr1:93952800-93959800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:93954200-93968000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr1:93954400-93967000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:93955600-93965600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:93955800-93960000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr1:93956000-93962000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:93956200-93974000	Weak transcription	HMEC	breast
17	chr1:93956400-93960600	Weak transcription	HUVEC	blood vessel
18	chr1:93956400-93963400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr1:93956400-93975200	Weak transcription	Fetal Stomach	stomach
20	chr1:93956600-93967000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr1:93956800-93959800	Weak transcription	Small Intestine	intestine
22	chr1:93957200-93962000	Weak transcription	Stomach Mucosa	stomach
23	chr1:93958000-93997200	Weak transcription	HSMMtube	muscle
24	chr1:93958400-93965600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr1:93958600-93959800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:93958800-93991800	Weak transcription	Gastric	stomach
27	chr1:93959000-93960000	Enhancers	Placenta Amnion	Placenta Amnion
28	chr1:93959000-93974800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr1:93959200-93959800	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr1:93959400-93960200	Enhancers	H9 Cell Line	embryonic stem cell
31	chr1:93959400-93960200	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr1:93959400-93960400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr1:93959400-93960400	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr1:93959600-93960000	Enhancers	HUES48 Cell Line	embryonic stem cell

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