Variant report

Variant	rs1545839
Chromosome Location	chr1:93959217-93959218
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs11800760	1.00[CEU][hapmap]
rs12407893	1.00[CEU][hapmap]
rs17131717	1.00[JPT][hapmap]
rs1991291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2433277	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2449373	1.00[AMR][1000 genomes]
rs2449376	1.00[AMR][1000 genomes]

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93943200-93974400	Weak transcription	Fetal Lung	lung
2	chr1:93944000-93974600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:93944200-93971800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:93944200-93974800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:93946800-93973200	Weak transcription	Fetal Intestine Small	intestine
6	chr1:93950200-93959400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:93950400-93974800	Weak transcription	HepG2	liver
8	chr1:93951000-93972800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:93951600-93960000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr1:93952600-93973600	Weak transcription	Brain Germinal Matrix	brain
11	chr1:93952800-93959800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:93954200-93968000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr1:93954400-93967000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:93955600-93965600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:93955800-93960000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr1:93956000-93962000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:93956200-93974000	Weak transcription	HMEC	breast
18	chr1:93956400-93960600	Weak transcription	HUVEC	blood vessel
19	chr1:93956400-93963400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr1:93956400-93975200	Weak transcription	Fetal Stomach	stomach
21	chr1:93956600-93967000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr1:93956800-93959800	Weak transcription	Small Intestine	intestine
23	chr1:93957200-93962000	Weak transcription	Stomach Mucosa	stomach
24	chr1:93958000-93959400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr1:93958000-93997200	Weak transcription	HSMMtube	muscle
26	chr1:93958400-93965600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr1:93958600-93959800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:93958800-93959400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr1:93958800-93991800	Weak transcription	Gastric	stomach
30	chr1:93959000-93960000	Enhancers	Placenta Amnion	Placenta Amnion
31	chr1:93959000-93974800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr1:93959200-93959800	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links